Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs116728951 chr5:154136493 C/T 0 490 30.08 33.47 4.87 KM Plot
PRAD rs11677230 chr2:239092054 T/C 7.55E-9 485 31.38 29 29.9 KM Plot
PRAD rs116778123 chr6:19125134 A/G 1.88E-6 489 30.73 31.87 61.83 KM Plot
PRAD rs11679146 chr2:103009412 A/G 3.9E-9 477 31.65 28.63 25.32 KM Plot
PRAD rs11679670 chr2:241778056 G/A 7.01E-6 481 29.32 32.5 30.38 KM Plot
PRAD rs11696864 chr20:6092017 T/G 7.75E-6 493 31.23 29.05 31.77 KM Plot
PRAD rs11697549 chr20:6085400 C/T 8.33E-7 489 31 28.87 31.77 KM Plot
PRAD rs117030701 chr12:52865900 C/T 1.08E-7 480 30.23 35.77 23.67 KM Plot
PRAD rs11704059 chr22:18449543 A/G 2.94E-6 489 30.8 31.9 27.08 KM Plot
PRAD rs11704608 chr22:18450466 G/A 8.25E-6 487 30.8 31.93 27.37 KM Plot
PRAD rs11704636 chr22:18450609 G/A 3.09E-6 488 30.9 31.93 26.8 KM Plot
PRAD rs11704733 chr22:18446212 T/G 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs11704827 chr22:18450287 A/T 3.0E-6 488 30.8 31.93 27.08 KM Plot
PRAD rs11705221 chr22:18443287 T/C 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs11718768 chr3:13994233 C/G 0.000113 494 27.37 31.3 30.8 KM Plot